Sedimentation, trapping, and rectification of dilute bacteria

Rectification of Swimming Bacteria and Self Driven Particle Systems by Arrays of Asymmetric Barriers

We show that the recent experimental observation of the rectification of swimming bacteria in a system with an array of asymmetric barriers occurs due to the ballistic component of the bacteria trajectories introduced by the bacterial "motor." Each bacteria selects a random direction for motion and then moves in this direction for a fixed period of time before randomly changing its orientation and moving in a new direction. In the limit where the bacteria undergo only Brownian motion, rectification by the barriers does not occur. We also examine the effects of steric interactions between the b…

Nonequilibrium phase transition in the sedimentation of reproducing particles

We study numerically and analytically the dynamics of a sedimenting suspension of active, reproducing particles, such as growing bacteria in a gravitational field. In steady state we find a non-equilibrium phase transition between a `sedimentation' regime, analogous to the sedimentation equilibrium of passive colloids, and a `uniform' regime, in which the particle density is constant in all but the top and bottom of the sample. We discuss the importance of fluctuations in particle density in locating the phase transition point, and report the kinetics of sedimentation at early times.

细菌定向运动与能量学

Transport and Energetics of Bacterial Rectification

研究细菌通过漏斗形障碍物的定向运动及能量学，结合实验、模拟与理论，提出无参数模型解释观测并预测最优几何结构，量化时间不可逆性及可提取功。

Rectification of Twitching bacteria through narrow channels: A numerical simulations study

Bacteria living on surfaces use different types of motility mechanisms to move on the surface in search of food or to form micro-colonies. Twitching is one such form of motility employed by bacteria such as N. gonorrhoeae, in which the polymeric extensions known as type IV pili mediate its movement. Pili extending from cell body adheres to the surface and pulls the bacteria by retraction. The bacterial movement is decided by the two-dimensional tug-of-war between the pili attached to the surface. Natural surfaces in which these micro-crawlers dwell are generally spatially inhomogeneous and hav…

Light-induced self-assembly of active rectification devices

Self-propelled colloidal objects, such as motile bacteria or synthetic microswimmers, have microscopically irreversible individual dynamics - a feature they share with all living systems. The incoherent behaviour of individual swimmers can then be harnessed (or "rectified") by microfluidic devices that create systematic motions impossible in equilibrium. Examples include flow of rotor particles round a circuit, steady rotation of a gear wheel in a bacterial bath, and pumping of bacteria between chambers by "funnel gates". Here we present a computational proof-of-concept study, showing that suc…

Run-and-tumble particles with hydrodynamics: sedimentation, trapping and upstream swimming

We simulate by lattice Boltzmann the nonequilibrium steady states of run-and-tumble particles (inspired by a minimal model of bacteria), interacting by far-field hydrodynamics, subject to confinement. Under gravity, hydrodynamic interactions barely perturb the steady state found without them, but for particles in a harmonic trap such a state is quite changed if the run length is larger than the confinement length: a self-assembled pump is formed. Particles likewise confined in a narrow channel show a generic upstream flux in Poiseuille flow: chiral swimming is not required.