Identifying the spatio-temporal network structure of brain activity from multi-neuronal data streams is one of the biggest challenges in neuroscience. Repeating patterns of precisely timed activity across a group of neurons is potentially indicative of a microcircuit in the underlying neural tissue. Frequent episode discovery, a temporal data mining framework, has recently been shown to be a computationally efficient method of counting the occurrences of such patterns. In this paper, we propose a framework to determine when the counts are statistically significant by modeling the counting process. Our model allows direct estimation of the strengths of functional connections between neurons with improved resolution over previously published methods. It can also be used to rank the patterns discovered in a network of neurons according to their strengths and begin to reconstruct the graph structure of the network that produced the spike data. We validate our methods on simulated data and present analysis of patterns discovered in data from cultures of cortical neurons.
Mounting evidence in neuroscience suggests the possibility of neuronal representations that individual neurons serve as the substrates of different mental representations in a point-to-point way. Combined with associationism, it can potentially address a range of theoretical problems and provide a straightforward explanation for our cognition. However, this idea is merely a hypothesis with many questions unsolved. In this paper, I will bring up a new framework to defend the idea of neuronal representations. The strategy is from micro- to macro-level. Specifically, in the micro-level, I first p…
Neural synchronization is believed to be critical for many brain functions. It frequently exhibits temporal variability, but it is not known if this variability has a specific temporal patterning. This study explores these synchronization/desynchronization patterns. We employ recently developed techniques to analyze the fine temporal structure of phase-locking to study the temporal patterning of synchrony of the human brain rhythms. We study neural oscillations recorded by EEG in $α$ and $β$ frequency bands in healthy human subjects at rest and during the execution of a task. While the phase-l…
When handling real-world data modeled by a complex network dynamical system, the number of the parameters is always even much more than the size of the data. Therefore, in many cases, it is impossible to estimate these parameters and however, the exact value of each parameter is frequently less interesting than the distribution of the parameters may contain important information towards understanding the system and data. In this paper, we propose this question arising by employing a data assimilation approach to estimate the distribution of the parameters in the leakage-integrate-fire (LIF) ne…
Many biological neuronal networks exhibit highly variable spiking activity. Balanced networks offer a parsimonious model of this variability. In balanced networks, strong excitatory synaptic inputs are canceled by strong inhibitory inputs on average and spiking activity is driven by transient breaks in this balance. Most previous studies of balanced networks assume a homogeneous or distance-dependent connectivity structure, but connectivity in biological cortical networks is more intricate. We use a heterogeneous mean-field theory of balanced networks to show that heterogeneous in-degrees can …
Information measures are often used to assess the efficacy of neural networks, and learning rules can be derived through optimization procedures on such measures. In biological neural networks, computation is restricted by the amount of available resources. Considering energy restrictions, it is thus reasonable to balance information processing efficacy with energy consumption. Here, we studied networks of non-linear Hawkes neurons and assessed the information flow through these networks using mutual information. We then applied gradient descent for a combination of mutual information and ener…
Epilepsy creates a persistent increase in the probability of spontaneous seizures. An ictal episode evolves due to acute disturbance of the fine-tuned balance between excitatory vs. inhibitory inputs within a neural network in favor of excitation. The current literature that proposes the activity-dependent disinhibition as a valid mechanism of chronic epilepsy, does not provide clues on why this mechanism emerges only in epileptic patients and how the vicious circle resulting of an activity-dependent disinhibition in over-active ictogenic network would end. A new model, which presents chronic …
Sustainable research on computational models of neuronal networks requires published models to be understandable, reproducible, and extendable. Missing details or ambiguities about mathematical concepts and assumptions, algorithmic implementations, or parameterizations hinder progress. Such flaws are unfortunately frequent and one reason is a lack of readily applicable standards and tools for model description. Our work aims to advance complete and concise descriptions of network connectivity but also to guide the implementation of connection routines in simulation software and neuromorphic ha…
Recurrent networks of dynamic elements frequently exhibit emergent collective oscillations, which can display substantial regularity even when the individual elements are considerably noisy. How noise-induced dynamics at the local level coexists with regular oscillations at the global level is still unclear. Here we show that a combination of stochastic recurrence-based initiation with deterministic refractoriness in an excitable network can reconcile these two features, leading to maximum collective coherence for an intermediate noise level. We report this behavior in the slow oscillation reg…
Stochastic dynamics and synchronization in motif-based neuronal networks
Toronto Metropolitan University（多伦多都会大学）；University of Toronto（多伦多大学）；Florida State University（佛罗里达州立大学）；Institute of Molecular Biophysics, Florida State University（佛罗里达州立大学分子生物物理研究所）；St. Michael’s Hospital, Unity Health Toronto（圣迈克尔医院（联合健康多伦多））
The characterization of coordinated activity in neuronal populations has received renewed interest in the light of advancing experimental techniques which allow recordings from multiple units simultaneously. Across both in vitro and in vivo preparations, nearby neurons show coordinated responses when spontaneously active, and when subject to external stimuli. Recent work (Truccolo, Hochberg, & Donoghue, 2010) has connected these coordinated responses to behavior, showing that small ensembles of neurons in arm related areas of sensorimotor cortex can reliably predict single-neuron spikes in beh…
Neuroscientists frequently use a certain statistical reasoning to establish the existence of distinct neuronal processes in the brain. We show that this reasoning is flawed and that the large corresponding literature needs reconsideration. We illustrate the fallacy with a recent study that received an enormous press coverage because it concluded that humans detect deceit better if they use unconscious processes instead of conscious deliberations. The study was published under a new open-data policy that enabled us to reanalyze the data with more appropriate methods. We found that unconscious p…
We investigate the modes of oscillation of heterogeneous ring-networks of quadratic integrate-and-fire neurons with non-local, space-dependent coupling. Perturbations of the equilibrium state with a particular wave number produce transient standing waves with a specific frequency, analogous to those in a tense string. In the neuronal network, the equilibrium corresponds to a spatially homogeneous, asynchronous state. Perturbations of this state excite the network's oscillatory modes, which reflect the interplay of episodes of synchronous spiking with the excitatory-inhibitory spatial interacti…
Early olfactory pathway responses to the presentation of an odor exhibit remarkably similar dynamical behavior across phyla from insects to mammals, and frequently involve transitions among quiescence, collective network oscillations, and asynchronous firing. We hypothesize that the time scales of fast excitation and fast and slow inhibition present in these networks may be the essential element underlying this similar behavior, and design an idealized, conductance-based integrate-and-fire (I&F) model to verify this hypothesis via numerical simulations. To better understand the mathematical st…
Epilepsy is a chronic neurological disorder affecting more than 50 million people globally. An epileptic seizure acts like a temporary shock to the neuronal system, disrupting normal electrical activity in the brain. Epilepsy is frequently diagnosed with electroencephalograms (EEGs). Current methods study the time-varying spectra and coherence but do not directly model changes in extreme behavior. Thus, we propose a new approach to characterize brain connectivity based on the joint tail behavior of the EEGs. Our proposed method, the conditional extremal dependence for brain connectivity (Conex…
A critical mystery in neuroscience lies in determining how anatomical structure impacts the complex functional dynamics of human thought. How does large-scale brain circuitry constrain states of neuronal activity and transitions between those states? We address these questions using a maximum entropy model of brain dynamics informed by white matter tractography. We demonstrate that the most probable brain states -- characterized by minimal energy -- display common activation profiles across brain areas: local spatially-contiguous sets of brain regions reminiscent of cognitive systems are co-ac…
