In this paper, we propose a computationally efficient approach -- space(Sparse PArtial Correlation Estimation)-- for selecting non-zero partial correlations under the high-dimension-low-sample-size setting. This method assumes the overall sparsity of the partial correlation matrix and employs sparse regression techniques for model fitting. We illustrate the performance of space by extensive simulation studies. It is shown that space performs well in both non-zero partial correlation selection and the identification of hub variables, and also outperforms two existing methods. We then apply space to a microarray breast cancer data set and identify a set of hub genes which may provide important insights on genetic regulatory networks. Finally, we prove that, under a set of suitable assumptions, the proposed procedure is asymptotically consistent in terms of model selection and parameter estimation.
In high-dimensional regression modelling, the number of candidate covariates to be included in the predictor is quite large, and variable selection is crucial. In this work, we propose a new penalty able to guarantee both sparse variable selection, i.e. exactly zero regression coefficient estimates, and quasi-unbiasedness for the coefficients of 'selected' variables in high dimensional regression models. Simulation results suggest that our proposal performs no worse than its competitors while always ensuring that the solution is unique.
Large-scale association analysis between multivariate responses and predictors is of great practical importance, as exemplified by modern business applications including social media marketing and crisis management. Despite the rapid methodological advances, how to obtain scalable estimators with free tuning of the regularization parameters remains unclear under general noise covariance structures. In this paper, we develop a new methodology called sequential scaled sparse factor regression (SESS) based on a new viewpoint that the problem of recovering a jointly low-rank and sparse regression …
We propose an l1-regularized likelihood method for estimating the inverse covariance matrix in the high-dimensional multivariate normal model in presence of missing data. Our method is based on the assumption that the data are missing at random (MAR) which entails also the completely missing at random case. The implementation of the method is non-trivial as the observed negative log-likelihood generally is a complicated and non-convex function. We propose an efficient EM algorithm for optimization with provable numerical convergence properties. Furthermore, we extend the methodology to handle …
We propose a new approach for sparse regression and marginal testing, for data with correlated features. Our procedure first clusters the features, and then chooses as the cluster prototype the most informative feature in that cluster. Then we apply either sparse regression (lasso) or marginal significance testing to these prototypes. While this kind of strategy is not entirely new, a key feature of our proposal is its use of the post-selection inference theory of Taylor et al. (2014) and Lee et al. (2014) to compute exact p-values and confidence intervals that properly account for the selecti…
We propose the group knockoff filter, a method for false discovery rate control in a linear regression setting where the features are grouped, and we would like to select a set of relevant groups which have a nonzero effect on the response. By considering the set of true and false discoveries at the group level, this method gains power relative to sparse regression methods. We also apply our method to the multitask regression problem where multiple response variables share similar sparsity patterns across the set of possible features. Empirically, the group knockoff filter successfully control…
We propose a sparse regression method based on the non-concave penalized density power divergence loss function which is robust against infinitesimal contamination in very high dimensionality. Present methods of sparse and robust regression are based on $\ell_1$-penalization, and their theoretical properties are not well-investigated. In contrast, we use a general class of folded concave penalties that ensure sparse recovery and consistent estimation of regression coefficients. We propose an alternating algorithm based on the Concave-Convex procedure to obtain our estimate, and demonstrate its…
Heavy-tailed continuous shrinkage priors, such as the horseshoe prior, are widely used for sparse estimation problems. However, there is limited work extending these priors to predictors with grouping structures. Of particular interest in this article, is regression coefficient estimation where pockets of high collinearity in the covariate space are contained within known covariate groupings. To assuage variance inflation due to multicollinearity we propose the group inverse-gamma gamma (GIGG) prior, a heavy-tailed prior that can trade-off between local and group shrinkage in a data adaptive f…
We introduce a sparse high-dimensional regression approach that can incorporate prior information on the regression parameters and can borrow information across a set of similar datasets. Prior information may for instance come from previous studies or genomic databases, and information borrowed across a set of genes or genomic networks. The approach is based on prior modelling of the regression parameters using the horseshoe prior, with a prior on the sparsity index that depends on external information. Multiple datasets are integrated by applying an empirical Bayes strategy on hyperparameter…
This paper considers a high-dimensional linear regression problem where there are complex correlation structures among predictors. We propose a graph-constrained regularization procedure, named Sparse Laplacian Shrinkage with the Graphical Lasso Estimator (SLS-GLE). The procedure uses the estimated precision matrix to describe the specific information on the conditional dependence pattern among predictors, and encourages both sparsity on the regression model and the graphical model. We introduce the Laplacian quadratic penalty adopting the graph information, and give detailed discussions on th…
Sparse covariates are frequent in classification and regression problems and in these settings the task of variable selection is usually of interest. As it is well known, sparse statistical models correspond to situations where there are only a small number of non--zero parameters and for that reason, they are much easier to interpret than dense ones. In this paper, we focus on the logistic regression model and our aim is to address robust and penalized estimation for the regression parameter. We introduce a family of penalized weighted $M-$type estimators for the logistic regression parameter…
We introduce a new sparse sliced inverse regression estimator called Cholesky matrix penalization and its adaptive version for achieving sparsity in estimating the dimensions of the central subspace. The new estimators use the Cholesky decomposition of the covariance matrix of the covariates and include a regularization term in the objective function to achieve sparsity in a computationally efficient manner. We establish the theoretical values of the tuning parameters that achieve estimation and variable selection consistency for the central subspace. Furthermore, we propose a new projection i…
Robust and Sparse Regression in GLM by Stochastic Optimization
The Graduate University for Advanced Studies（高级研究大学院大学）；The Institute of Statistical Mathematics（统计数学研究所）；Nagoya University Graduate School of Medicine（名古屋大学医学研究科）
In high-dimensional data, many sparse regression methods have been proposed. However, they may not be robust against outliers. Recently, the use of density power weight has been studied for robust parameter estimation and the corresponding divergences have been discussed. One of such divergences is the $γ$-divergence and the robust estimator using the $γ$-divergence is known for having a strong robustness. In this paper, we consider the robust and sparse regression based on $γ$-divergence. We extend the $γ$-divergence to the regression problem and show that it has a strong robustness under hea…
We propose the Factor Augmented sparse linear Regression Model (FARM) that not only encompasses both the latent factor regression and sparse linear regression as special cases but also bridges dimension reduction and sparse regression together. We provide theoretical guarantees for the estimation of our model under the existence of sub-Gaussian and heavy-tailed noises (with bounded (1+x)-th moment, for all x>0), respectively. In addition, the existing works on supervised learning often assume the latent factor regression or the sparse linear regression is the true underlying model without just…
When the design matrix has orthonormal columns, "soft thresholding" the ordinary least squares (OLS) solution produces the Lasso solution [Tibshirani, 1996]. If one uses the Puffer preconditioned Lasso [Jia and Rohe, 2012], then this result generalizes from orthonormal designs to full rank designs (Theorem 1). Theorem 2 refines the Puffer preconditioner to make the Lasso select the same model as removing the elements of the OLS solution with the largest p-values. Using a generalized Puffer preconditioner, Theorem 3 relates ridge regression to the preconditioned Lasso; this result is for the hi…
Modern technologies are generating ever-increasing amounts of data. Making use of these data requires methods that are both statistically sound and computationally efficient. Typically, the statistical and computational aspects are treated separately. In this paper, we propose an approach to entangle these two aspects in the context of regularized estimation. Applying our approach to sparse and group-sparse regression, we show that it can improve on standard pipelines both statistically and computationally.
Sparseness of the regression coefficient vector is often a desirable property, since, among other benefits, sparseness improves interpretability. In practice, many true regression coefficients might be negligibly small, but non-zero, which we refer to as quasi-sparseness. Spike-and-slab priors as introduced in (Chipman et al., 2001) can be tuned to ignore very small regression coefficients, and, as a consequence provide a trade-off between prediction accuracy and interpretability. However, spike-and-slab priors with full support lead to inconsistent Bayes factors, in the sense that the Bayes f…
In this paper, we consider the classic measurement error regression scenario in which our independent, or design, variables are observed with several sources of additive noise. We will show that our motivating example's replicated measurements on both the design and dependent variables may be leveraged to enhance a sparse regression algorithm. Specifically, we estimate the variance and use it to scale our design variables. We demonstrate the efficacy of scaling from several points of view and validate it empirically with a biomass characterization data set using two of the most widely used spa…
Carnegie Mellon University（卡内基梅隆大学）；Georgia Institute of Technology（佐治亚理工学院）
Sparse linear regression is a vast field and there are many different algorithms available to build models. Two new papers published in Statistical Science study the comparative performance of several sparse regression methodologies, including the lasso and subset selection. Comprehensive empirical analyses allow the researchers to demonstrate the relative merits of each estimator and provide guidance to practitioners. In this discussion, we summarize and compare the two studies and we examine points of agreement and divergence, aiming to provide clarity and value to users. The authors have st…
School of Electrical Engineering, Korea Advanced Institute of Science and Technology（韩国科学技术院电气工程学院）
We consider the classical sparse regression problem of recovering a sparse signal $x_0$ given a measurement vector $y = Φx_0+w$. We propose a tree search algorithm driven by the deep neural network for sparse regression (TSN). TSN improves the signal reconstruction performance of the deep neural network designed for sparse regression by performing a tree search with pruning. It is observed in both noiseless and noisy cases, TSN recovers synthetic and real signals with lower complexity than a conventional tree search and is superior to existing algorithms by a large margin for various types of …
We develop a Bayesian methodology aimed at simultaneously estimating low-rank and row-sparse matrices in a high-dimensional multiple-response linear regression model. We consider a carefully devised shrinkage prior on the matrix of regression coefficients which obviates the need to specify a prior on the rank, and shrinks the regression matrix towards low-rank and row-sparse structures. We provide theoretical support to the proposed methodology by proving minimax optimality of the posterior mean under the prediction risk in ultra-high dimensional settings where the number of predictors can gro…
In this paper, we address the challenging problem of selecting tuning parameters for high-dimensional sparse regression. We propose a simple and computationally efficient method, called path thresholding (PaTh), that transforms any tuning parameter-dependent sparse regression algorithm into an asymptotically tuning-free sparse regression algorithm. More specifically, we prove that, as the problem size becomes large (in the number of variables and in the number of observations), PaTh performs accurate sparse regression, under appropriate conditions, without specifying a tuning parameter. In fin…
Principal component regression (PCR) is a two-stage procedure: the first stage performs principal component analysis (PCA) and the second stage constructs a regression model whose explanatory variables are replaced by principal components obtained by the first stage. Since PCA is performed by using only explanatory variables, the principal components have no information about the response variable. To address the problem, we propose a one-stage procedure for PCR in terms of singular value decomposition approach. Our approach is based upon two loss functions, a regression loss and a PCA loss, w…
This paper deals with the proportional hazards model proposed by D. R. Cox in a high-dimensional and sparse setting for a regression parameter. To estimate the regression parameter, the Dantzig selector is applied. The variable selection consistency of the Dantzig selector for the model will be proved. This property enables us to reduce the dimension of the parameter and to construct asymptotically normal estimators for the regression parameter and the cumulative baseline hazard function.
Multivariate regression model is a natural generalization of the classical univari- ate regression model for fitting multiple responses. In this paper, we propose a high- dimensional multivariate conditional regression model for constructing sparse estimates of the multivariate regression coefficient matrix that accounts for the dependency struc- ture among the multiple responses. The proposed method decomposes the multivariate regression problem into a series of penalized conditional log-likelihood of each response conditioned on the covariates and other responses. It allows simultaneous esti…
We propose and analyze a novel framework for learning sparse representations, based on two statistical techniques: kernel smoothing and marginal regression. The proposed approach provides a flexible framework for incorporating feature similarity or temporal information present in data sets, via non-parametric kernel smoothing. We provide generalization bounds for dictionary learning using smooth sparse coding and show how the sample complexity depends on the L1 norm of kernel function used. Furthermore, we propose using marginal regression for obtaining sparse codes, which significantly improv…
We consider the high-dimensional sparse linear regression problem of accurately estimating a sparse vector using a small number of linear measurements that are contaminated by noise. It is well known that the standard cadre of computationally tractable sparse regression algorithms---such as the Lasso, Orthogonal Matching Pursuit (OMP), and their extensions---perform poorly when the measurement matrix contains highly correlated columns. To address this shortcoming, we develop a simple greedy algorithm, called SWAP, that iteratively swaps variables until convergence. SWAP is surprisingly effecti…
We provide a novel -- and to the best of our knowledge, the first -- algorithm for high dimensional sparse regression with constant fraction of corruptions in explanatory and/or response variables. Our algorithm recovers the true sparse parameters with sub-linear sample complexity, in the presence of a constant fraction of arbitrary corruptions. Our main contribution is a robust variant of Iterative Hard Thresholding. Using this, we provide accurate estimators: when the covariance matrix in sparse regression is identity, our error guarantee is near information-theoretically optimal. We then de…
We proposed a new penalized method in this paper to solve sparse Poisson Regression problems. Being different from $\ell_1$ penalized log-likelihood estimation, our new method can be viewed as penalized weighted score function method. We show that under mild conditions, our estimator is $\ell_1$ consistent and the tuning parameter can be pre-specified, which shares the same good property of the square-root Lasso.
University of California, Berkeley（加州大学伯克利分校）；University of Pittsburgh（匹兹堡大学）
Sparse regression models are increasingly prevalent due to their ease of interpretability and superior out-of-sample performance. However, the exact model of sparse regression with an $\ell_0$ constraint restricting the support of the estimators is a challenging (\NP-hard) non-convex optimization problem. In this paper, we derive new strong convex relaxations for sparse regression. These relaxations are based on the ideal (convex-hull) formulations for rank-one quadratic terms with indicator variables. The new relaxations can be formulated as semidefinite optimization problems in an extended s…
We devise a one-shot approach to distributed sparse regression in the high-dimensional setting. The key idea is to average "debiased" or "desparsified" lasso estimators. We show the approach converges at the same rate as the lasso as long as the dataset is not split across too many machines. We also extend the approach to generalized linear models.
The Graduate University for Advanced Studies, SOKENDAI（综合研究大学院大学）
Robust and sparse estimation of linear regression coefficients is investigated. The situation addressed by the present paper is that covariates and noises are sampled from heavy-tailed distributions, and the covariates and noises are contaminated by malicious outliers. Our estimator can be computed efficiently. Further, the error bound of the estimator is nearly optimal.
Volterra and polynomial regression models play a major role in nonlinear system identification and inference tasks. Exciting applications ranging from neuroscience to genome-wide association analysis build on these models with the additional requirement of parsimony. This requirement has high interpretative value, but unfortunately cannot be met by least-squares based or kernel regression methods. To this end, compressed sampling (CS) approaches, already successful in linear regression settings, can offer a viable alternative. The viability of CS for sparse Volterra and polynomial models is th…
In this paper, we propose methods for functional predictor selection and the estimation of smooth functional coefficients simultaneously in a scalar-on-function regression problem under high-dimensional multivariate functional data setting. In particular, we develop two methods for functional group-sparse regression under a generic Hilbert space of infinite dimension. We show the convergence of algorithms and the consistency of the estimation and the selection (oracle property) under infinite-dimensional Hilbert spaces. Simulation studies show the effectiveness of the methods in both the selec…
Carnegie Mellon University（卡内基梅隆大学）；University of Chicago（芝加哥大学）
We study the problem of multivariate regression where the data are naturally grouped, and a regression matrix is to be estimated for each group. We propose an approach in which a dictionary of low rank parameter matrices is estimated across groups, and a sparse linear combination of the dictionary elements is estimated to form a model within each group. We refer to the method as conditional sparse coding since it is a coding procedure for the response vectors Y conditioned on the covariate vectors X. This approach captures the shared information across the groups while adapting to the structur…
We present a novel binary convex reformulation of the sparse regression problem that constitutes a new duality perspective. We devise a new cutting plane method and provide evidence that it can solve to provable optimality the sparse regression problem for sample sizes n and number of regressors p in the 100,000s, that is two orders of magnitude better than the current state of the art, in seconds. The ability to solve the problem for very high dimensions allows us to observe new phase transition phenomena. Contrary to traditional complexity theory which suggests that the difficulty of a probl…
Indian Institute of Technology Madras（印度理工学院马德拉斯分校）
Linear regression models contaminated by Gaussian noise (inlier) and possibly unbounded sparse outliers are common in many signal processing applications. Sparse recovery inspired robust regression (SRIRR) techniques are shown to deliver high quality estimation performance in such regression models. Unfortunately, most SRIRR techniques assume \textit{a priori} knowledge of noise statistics like inlier noise variance or outlier statistics like number of outliers. Both inlier and outlier noise statistics are rarely known \textit{a priori} and this limits the efficient operation of many SRIRR alg…
Xi’an Jiaotong University（西安交通大学）；State Key Laboratory of Management and Control for Complex Systems（复杂系统管理与控制国家重点实验室）
Given $m$ $d$-dimensional responsors and $n$ $d$-dimensional predictors, sparse regression finds at most $k$ predictors for each responsor for linear approximation, $1\leq k \leq d-1$. The key problem in sparse regression is subset selection, which usually suffers from high computational cost. Recent years, many improved approximate methods of subset selection have been published. However, less attention has been paid on the non-approximate method of subset selection, which is very necessary for many questions in data analysis. Here we consider sparse regression from the view of correlation, a…
We propose a regression algorithm that utilizes a learned dictionary optimized for sparse inference on a D-Wave quantum annealer. In this regression algorithm, we concatenate the independent and dependent variables as a combined vector, and encode the high-order correlations between them into a dictionary optimized for sparse reconstruction. On a test dataset, the dependent variable is initialized to its average value and then a sparse reconstruction of the combined vector is obtained in which the dependent variable is typically shifted closer to its true value, as in a standard inpainting or …
Sparse regression and variable selection for large-scale data have been rapidly developed in the past decades. This work focuses on sparse ridge regression, which enforces the sparsity by use of the L0 norm. We first prove that the continuous relaxation of the mixed integer second order conic (MISOC) reformulation using perspective formulation is equivalent to that of the convex integer formulation proposed in recent work. We also show that the convex hull of the constraint system of MISOC formulation is equal to its continuous relaxation. Based upon these two formulations (i.e., the MISOC for…
Relaxed Sparse Eigenvalue Conditions for Sparse Estimation via Non-convex Regularized Regression
Department of Automation, Tsinghua University, Beijing 100084, P.R.China（自动化系，清华大学，北京100084，中国）；State Key Lab of Intelligent Technologies and Systems（智能技术与系统国家重点实验室）；Tsinghua National Laboratory for Information Science and Technology(TNList)（信息科学与技术国家实验室（清华大学））
This paper proposes a new algorithm for multiple sparse regression in high dimensions, where the task is to estimate the support and values of several (typically related) sparse vectors from a few noisy linear measurements. Our algorithm is a "forward-backward" greedy procedure that -- uniquely -- operates on two distinct classes of objects. In particular, we organize our target sparse vectors as a matrix; our algorithm involves iterative addition and removal of both (a) individual elements, and (b) entire rows (corresponding to shared features), of the matrix. Analytically, we establish that …
Operations Research Center, Massachusetts Institute of Technology（麻省理工学院运筹学中心）
We present a novel method for exact hierarchical sparse polynomial regression. Our regressor is that degree $r$ polynomial which depends on at most $k$ inputs, counting at most $\ell$ monomial terms, which minimizes the sum of the squares of its prediction errors. The previous hierarchical sparse specification aligns well with modern big data settings where many inputs are not relevant for prediction purposes and the functional complexity of the regressor needs to be controlled as to avoid overfitting. We present a two-step approach to this hierarchical sparse regression problem. First, we dis…
This paper develops theoretical results regarding noisy 1-bit compressed sensing and sparse binomial regression. We show that a single convex program gives an accurate estimate of the signal, or coefficient vector, for both of these models. We demonstrate that an s-sparse signal in R^n can be accurately estimated from m = O(slog(n/s)) single-bit measurements using a simple convex program. This remains true even if each measurement bit is flipped with probability nearly 1/2. Worst-case (adversarial) noise can also be accounted for, and uniform results that hold for all sparse inputs are derived…
Regularized regression problems are ubiquitous in statistical modeling, signal processing, and machine learning. Sparse regression in particular has been instrumental in scientific model discovery, including compressed sensing applications, variable selection, and high-dimensional analysis. We propose a broad framework for sparse relaxed regularized regression, called SR3. The key idea is to solve a relaxation of the regularized problem, which has three advantages over the state-of-the-art: (1) solutions of the relaxed problem are superior with respect to errors, false positives, and condition…
We study the problem of detection of a p-dimensional sparse vector of parameters in the linear regression model with Gaussian noise. We establish the detection boundary, i.e., the necessary and sufficient conditions for the possibility of successful detection as both the sample size n and the dimension p tend to the infinity. Testing procedures that achieve this boundary are also exhibited. Our results encompass the high-dimensional setting (p>> n). The main message is that, under some conditions, the detection boundary phenomenon that has been proved for the Gaussian sequence model, extends t…
In many problem settings, parameter vectors are not merely sparse but dependent in such a way that non-zero coefficients tend to cluster together. We refer to this form of dependency as "region sparsity." Classical sparse regression methods, such as the lasso and automatic relevance determination (ARD), which model parameters as independent a priori, and therefore do not exploit such dependencies. Here we introduce a hierarchical model for smooth, region-sparse weight vectors and tensors in a linear regression setting. Our approach represents a hierarchical extension of the relevance determina…
We compute approximate solutions to L0 regularized linear regression using L1 regularization, also known as the Lasso, as an initialization step. Our algorithm, the Lass-0 ("Lass-zero"), uses a computationally efficient stepwise search to determine a locally optimal L0 solution given any L1 regularization solution. We present theoretical results of consistency under orthogonality and appropriate handling of redundant features. Empirically, we use synthetic data to demonstrate that Lass-0 solutions are closer to the true sparse support than L1 regularization models. Additionally, in real-world …
We present a sparse analogue to stochastic gradient descent that is guaranteed to perform well under similar conditions to the lasso. In the linear regression setup with irrepresentable noise features, our algorithm recovers the support set of the optimal parameter vector with high probability, and achieves a statistically quasi-optimal rate of convergence of Op(k log(d)/T), where k is the sparsity of the solution, d is the number of features, and T is the number of training examples. Meanwhile, our algorithm does not require any more computational resources than stochastic gradient descent. I…
We study the performance of sparse regression methods and propose new techniques to distill the governing equations of dynamical systems from data. We first look at the generic methodology of learning interpretable equation forms from data, proposed by Brunton et al., followed by performance of LASSO for this purpose. We then propose a new algorithm that uses the dual of LASSO optimization for higher accuracy and stability. In the second part, we propose a novel algorithm that learns the candidate function library in a completely data-driven manner to distill the governing equations of the dyn…
Sparse Principal Component Analysis (SPCA) and Sparse Linear Regression (SLR) have a wide range of applications and have attracted a tremendous amount of attention in the last two decades as canonical examples of statistical problems in high dimension. A variety of algorithms have been proposed for both SPCA and SLR, but an explicit connection between the two had not been made. We show how to efficiently transform a black-box solver for SLR into an algorithm for SPCA: assuming the SLR solver satisfies prediction error guarantees achieved by existing efficient algorithms such as those based on …
