We use a set of semi-numerical simulations based on Zel'dovich approximation, friends-of-friends algorithm and excursion set formalism to generate reionization maps of high dynamic range with a range of assumptions regarding the distribution and luminosity of ionizing sources and the spatial distribution of sinks for the ionizing radiation. We find that ignoring the inhomogeneous spatial distribution of regions of high gas density where recombinations are important -- as is often done in studies of this kind -- can lead to misleading conclusions regarding the topology of reionization, especially if reionization occurs in the photon-starved regime suggested by Lya forest data. The inhomogeneous spatial distribution of recombinations significantly reduces the mean free path of ionizing photons and the typical size of coherently ionized regions. Reionization proceeds then much more as an outside-in process. Low-density regions far from ionizing sources become ionized before regions of high gas density not hosting sources of ionizing radiation. The spatial distribution of sinks of ionization radiation also significantly affects shape and amplitude the power spectrum of fluctuations of 21cm emission. The slope of the 21cm power spectrum as measured by upcoming 21cm experiments should be able to distinguish to what extent the topology of reionization proceeds outside-in or inside-out while the evolution of the amplitude of the power spectrum with increasing ionized mass fraction should be sensitive to the spatial distribution and the luminosity of ionizing sources.
We use a large set of hydrodynamical simulations, combined with measurements of the Lyman alpha opacity of the IGM taken from the literature, to obtain robust estimates for the photoionization rate per hydrogen atom at z=5 and 6. We find the photoionization rate drops by a factor of two and four, respectively, compared to our recent measurements at z = 2 - 4. The number of ionizing photons emitted by known sources at z=5 and 6, based on an extrapolation of source numbers below the detection limit and standard assumptions for the relationship between the ionizing emissivity and observed luminos…
Lyman-alpha absorption is a prominent cosmological tool for probing both galactic halos and the intergalactic medium at high redshift. We consider a variety of sources that can be used as the Lyman-alpha emitters for this purpose. Among these sources, we argue that quasars are the best probes of the evolution of massive halos, while gamma-ray bursts represent the cleanest sources for studying the reionization of the intergalactic medium.
We use a numerical simulation of cosmological reionization to estimate the likelihood of detecting Lyman-alpha emitting galaxies during the pre-reionization era. We show that it is possible to find galaxies even at z~9 that are barely affected by the dumping wing of the Gunn-Peterson absorption from the neutral IGM outside of their HII regions. The damping wing becomes rapidly more significant at z>9, but even at z>10 is it not inconceivable (although quite hard) to see a Lyman-alpha emission line from a star-forming galaxy.
The discovery of Lyman-alpha emission from galaxies at redshifts beyond z~6.5 should not be naively interpreted as implying that the intergalactic medium (IGM) had been reionized at higher redsifts. We show that a cluster of faint undetected sources around each observed galaxy generates an HII region sufficiently large to allow transmission of the galaxy's Lyman-alpha line prior to reionization. We also show that quasars may contribute a significant fraction of the ionizing photons to HII regions around galaxies with a velocity dispersion larger than ~100km/s. These contributing quasars are no…
Lyman-alpha emission from galaxies should be suppressed completely or partially at redshifts beyond reionization. Without knowing the instrinsic properties of galaxies at z = 6.5, this attenuation is hard to infer in any one source, but can be infered from a comparison of luminosity functions of lyman-alpha emitters at redshifts just before and after reionization. We combine published surveys of widely varying depths and areas to construct luminosity functions at z=6.5 and 5.7, where the characteristic luminosity L_star and density phi_star are well constrained while the faint-end slope of the…
We present the star formation histories, luminosities, colors, mass to light ratios, and halo masses of "galaxies" formed in a simulation of cosmological reionization. We compare these galaxies with Lyman Break Galaxies observed at high redshift. While the simulation is severely limited by the small box size, the simulated galaxies do appear as fainter cousins of the observed ones. They have similar colors, and both simulated and observed galaxies can be fitted with the same luminosity function. This is significant to the process of reionization since in the simulation the stars alone are resp…
The spectra of the first galaxies and quasars in the Universe should be strongly absorbed shortward of their rest-frame Lyman-alpha wavelength by neutral hydrogen (HI) in the intervening intergalactic medium. However, the Lyman-alpha line photons emitted by these sources are not eliminated but rather scatter until they redshift out of resonance and escape due to the Hubble expansion of the surrounding intergalactic HI. We calculate the resulting brightness distribution and the spectral shape of the diffuse Lyman-alpha line emission around high redshift sources, before the intergalactic medium …
The first, self-consistent calculations are presented of the cosmological, H2-dissociating UV background produced during the epoch of reionization by the sources of reionization. Large-scale radiative transfer simulations of reionization trace the impact of all the ionizing starlight on the IGM from all the sources in our simulation volume down to dwarf galaxies of mass ~10^8 Msun, identified by very high-resolution N-body simulations, including the self-regulating effect of IGM photoheating on dwarf galaxy formation. The UV continuum emitted below 13.6 eV by each source is then transferred th…
Searches for Lyman-alpha emission lines are among the most effective ways to identify high-redshift galaxies. They are particularly interesting because they probe not only the galaxies themselves but also the ionization state of the intergalactic medium (IGM). The observed line strengths depend on the amount by which each photon is able to redshift away from line center before encountering neutral gas and hence on the size distribution of HII regions surrounding the sources. Here, we use an analytic model of that size distribution to study the effects of reionization on the luminosity function…
The redshift at which the universe was reionized is currently unknown. We examine the optimal strategy for extracting this redshift, z_{reion}, from the spectra of early sources. For a source located at a redshift z_s beyond but close to reionization, 1<[(1+z_s)/(1+z_{reion})]<(32/27), the Gunn-Peterson trough splits into disjoint Lyman-alpha, beta, and possibly higher Lyman series troughs, with some transmitted flux in between these troughs. We show that although the transmitted flux is suppressed considerably by the dense Lyman-alpha forest after reionization, it is still detectable for suff…
Lyman-alpha emission from high-redshift galaxies may be a powerful probe of the ionization history of the IGM at z>6: the observed Lyman-alpha emission line is sensitive to the neutral fraction of IGM hydrogen in the range 0.1-1. We present calculations of observed Lyman-alpha emission lines from z>6 galaxies, illustrating the effect of varying the many free parameters associated with the emitting galaxy, its halo, and the IGM around the galaxy. In particular, we use a dynamic model of the IGM that includes the effect of IGM infall toward the emitting galaxy. Galactic winds may play a crucial …
The central overlap phase of cosmological hydrogen reionization is fundamentally a change in the topology of ionized regions. Before overlap, ionized bubbles grew in isolation. During overlap, they merge into a percolating ionized medium, which fills an ever-increasing volume and eventually replaces neutral gas throughout the intergalactic medium. Overlap can therefore be well studied using topological statistics, and in particular the genus number of the neutral-ionized interface. The most promising observational tools for applying such tests are (a) Lyman alpha galaxies, and (b) 21 cm tomogr…
The Doppler parameter distribution of Lyman-alpha absorption is calculated for a set of different reionization histories. The differences in temperature between different reionization histories are as large as a factor three to four depending on the spectrum of the ionizing sources and the redshift of helium reionization. These temperature differences result in observable differences in the Doppler parameter distribution. Best agreement with the observed Doppler parameter distribution between redshift two and four is found if hydrogen and helium are reionized simultaneously at or before redshi…
The reionization of hydrogen in the intergalactic medium (IGM) is a crucial landmark in the history of the universe, but the processes through which it occurs remain mysterious. In particular, recent numerical and analytic work suggest that reionization by stellar sources is driven by large-scale density fluctuations and must be inhomogeneous on scales of many comoving Mpc. We examine the prospects for constraining the topology of neutral and ionized gas through Lyman-alpha absorption of high-redshift sources. One method is to search for gaps in the Gunn-Peterson absorption troughs of luminous…
We investigate the interaction of Lyman alpha photons produced by the first stars in the universe with the intergalactic medium (IGM) prior to reionization. The background Lyman alpha spectral profile is obtained by solving a Fokker-Planck equation. Accurate values of the heating and scattering rates, and the spin-kinetic temperature coupling coefficient, are presented. We show that the heating rate induced by the Lyman alpha scatterings is much lower than found previously, and is basically negligible. The dominant heating source is most likely the X-rays from the first ionizing sources, which…
For a source of Ly alpha radiation embedded in a neutral intergalactic medium (IGM) prior to the reionization epoch, the emission line is strongly suppressed by the intervening IGM. The damping wing of the so-called Gunn-Peterson trough can extend to the red side of the emission line, and erase a significant fraction of the total line flux. However, the transmitted fraction increases with the size of the local cosmological HII region surrounding the source, and therefore with the ionizing luminosity and age of the source. Motivated by the recent discovery of a Ly alpha emitting galaxy at a red…
One well-known way to constrain the hydrogen neutral fraction, x_H, of the high-redshift intergalactic medium (IGM) is through the shape of the red damping wing of the Lya absorption line. We examine this method's effectiveness in light of recent models showing that the IGM neutral fraction is highly inhomogeneous on large scales during reionization. Using both analytic models and "semi-numeric" simulations, we show that the "picket-fence" absorption typical in reionization models introduces both scatter and a systematic bias to the measurement of x_H. In particular, we show that simple fits t…
We made a narrowband NB973 (bandwidth of 200A at 9755A) imaging of the Subaru Deep Field (SDF) and found two z=7 Lyman alpha emitter (LAE) candidates down to NB973=24.9. Carrying out deep follow-up spectroscopy, we identified one of them as a real z=6.96 LAE. This has shown that galaxy formation was in progress just 750 Myr after the Big Bang. Meanwhile, the Lyman alpha line luminosity function of LAE is known to decline from z=5.7 to 6.6 in the SDF. L* at z=6.6 is 40-60% of that at z=5.7. We also confirm that the number density of z=7 LAE is only 17% of the density at z=6.6 comparing the late…
We report the discovery of a Lyman-alpha-emitting galaxy at redshift z=6.545 serendipitously identified in the course of spectroscopic follow-up of hard X-ray sources on behalf of the Serendipitous Extragalactic X-Ray Source Identification (SEXSI) survey. The line flux of the galaxy, 2.1e-17 erg/cm2/s, is similar to line fluxes probed by narrow-band imaging surveys; the 5.2 square-arcminutes surveyed implies a surface density of z~6.5 Lyman-alpha emitters somewhat higher than that inferred from narrow-band surveys. This source marks the sixth Lyman-alpha-emitting galaxy identified at z~6.5, a …
We discuss new observational constraints on the abundance of faint high redshift Lyman-alpha emitters secured from a deep Keck near-infrared spectroscopic survey which utilizes the strong magnification provided by lensing galaxy clusters at intermediate redshift (z=0.2-0.5). In each of 9 clusters we have undertaken a systematic `blind' search for line emission with NIRSPEC in the J-band within carefully-selected regions which offer very high magnifications (>10-50x) for background sources with redshifts z~10. The high magnification enables the detection of emission at unprecedented limits (10^…
Near-infrared observations of Lyman-break galaxies at redshifts z~3 are beginning to provide constraints on ages, star-formation histories, dust content, metallicities, and stellar masses. At present, uncertainties of more than an order of magnitude are typical for many of these parameters. It is nonetheless interesting to ask what the stellar-population models imply for the existence and luminosities of Lyman-break galaxies at higher redshift. To this end we examine the inferred star-formation rates in two well-studied samples of galaxies as a function of redshift out to z = 10 for various be…
Lyman alpha galaxies at high redshifts offer a powerful probe of both the formation of galaxies and the reionization of the intergalactic medium. Lyman alpha line emission is an efficient tool for identifying young galaxies at high redshift, because it is strong in systems with young stars and little or no dust-- properties expected in galaxies undergoing their first burst of star-formation. Lyman alpha galaxies also provide a robust test of the reionization epoch that is independent of Gunn-Peterson trough observations in quasar spectra and is better able to distinguish line center optical de…
At redshifts beyond z>6, as the mean fraction of neutral hydrogen x_HI in the intergalactic medium (IGM) increases, the line flux of Lyman alpha (Lya) emitters can be significantly suppressed, which can result in a decrease in the observed number of emitters at a given Lya flux. However, cosmological HII regions surrounding the Lya emitting galaxies alleviate these effects. We use simple models of the Lya line suppression that incorporate the presence of HII regions to predict the overall effect of the Lya absorption on the Lya luminosity function. We find, in agreement with other recent studi…
Ionizing sources embedded in the neutral intergalactic medium (IGM) before cosmological reionization generate discrete HII regions. We show that a sufficiently bright quasar (for example, one tenth as luminous as that recently discovered by Fan et al.) can ionize a large volume, allowing the transmission of a substantial fraction of the flux of its intrinsic Lyman alpha emission line on both sides of the Lyman alpha wavelength. The observed line profile is richly informative. We show that a sufficiently accurate, high spectral resolution ($R\approx 10^4$) measurement of the line profile of a b…
Concurrent observations of Lyman continuum (LyC) and Lyman-alpha (Lya) emission escaping from star-forming systems at low redshift are essential to understanding the physics of reionization at high redshift (z >~ 6). Some have suggested reionization is dominated by numerous small galaxies with LyC escape fractions f_e ~ 10%, while others suggest mini-quasars with higher f_e might also play a role. At z > 3, direct observation of LyC leakage becomes progressively more improbable due to the increase of intervening Ly limit systems, leaving Lya as the primary diagnostic available to the James Web…
We use a semi-analytic model of Lyman alpha emitters (LAEs) to constrain the reionization history. By considering two physically motivated scenarios in which reionization ends either early (ERM, z_i ~ 7) or late (LRM, z_i ~ 6), we fix the global value of the IGM neutral fraction (e.g. chi_{HI}=3 times 10^{-4}, 0.15 at z=6.56 for the ERM and LRM, respectively) leaving only the star formation efficiency and the effective escape fraction of Lya photons as free parameters. The ERM fits the observed LAE luminosity function (LF) at z=5.7 and 6.56 requiring no redshift evolution or mass dependence of…
The temperature of the diffuse, photo-heated intergalactic medium (IGM) depends on its reionization history because the thermal time scales are long. The widths of the hydrogen Lyman-alpha absorption lines seen in the spectra of distant quasars that arise in the IGM can be used to determine its temperature. We use a wavelet analysis of the Lyman-alpha forest region of quasar spectra to demonstrate that there is a relatively sudden increase in the line widths between redshifts z=3.5 and 3.0, which we associate with entropy injection resulting from the reionization of HeII. The subsequent fall-o…
During the epoch of reionization, Ly-alpha photons emitted by the first stars can couple the neutral hydrogen spin temperature to the kinetic gas temperature, providing the opportunity to observe the gas in emission or absorption in the 21-cm line. Given the bright foregrounds, it is of prime importance to determine precisely the fluctuations signature of the signal, to be able to extract it by its correlation power. LICORICE is a Monte-Carlo radiative transfer code, coupled to the dynamics via an adaptative Tree-SPH code. We present here the Ly-alpha part of the implementation, and validate i…
We explore the impact of spatial fluctuations in the intergalactic medium temperature on the Lyman-alpha forest flux power spectrum near z ~ 3. We develop a semianalytic model to examine temperature fluctuations resulting from inhomogeneous HI and incomplete HeII reionizations. Detection of these fluctuations might provide insight into the reionization histories of hydrogen and helium. Furthermore, these fluctuations, neglected in previous analyses, could bias constraints on cosmological parameters from the Lyman-alpha forest. We find that the temperature fluctuations resulting from inhomogene…
The first, self-consistent calculations of the cosmological H_2 dissociating UV background produced during the epoch of reionization (EOR) by the sources of reionization are presented. Large-scale radiative transfer simulations of reionization trace the impact of all the ionizing starlight on the IGM from all the sources in our simulation volume down to dwarf galaxies of mass ~ 10^8 solar mass, identified by very high-resolution N-body simulations, including the self-regulating effect of IGM photoheating on dwarf galaxy formation. The UV continuum emitted below 13.6 eV by each source is then t…
We analyze the Ly alpha forest properties of a sample of 15 high redshift quasars lying between z = 4.42 and z = 5.75, using high signal-to-noise spectra obtained with ESI on the Keck II 10 m telescope. The distribution of transmissions in the Ly alpha region in this redshift range is shown to be consistent with that found in lambda cold dark matter simulations with a smoothly evolving ionization rate as a function of redshift. The extrapolation of the ionizing flux to z = 6.05 lies a factor of two higher than a 2 sigma upper limit placed by Cen & McDonald (2001) at this redshift, based on the…
Recent observations imply that the observed number counts of Lya Emitters (LAEs) evolved significantly between z=5.7 and z=6.5. It has been suggested that this was due to a rapid evolution in the ionisation state, and hence transmission of the IGM which caused Lya flux from z=6.5 galaxies to be more strongly suppressed. In this paper we consider the joint evolution of the Lya and UV luminosity functions (LFs) and show that the IGM transmission evolved between z=6.5 and z=5.7 by a factor 1.1 <R < 1.8 (95% CL). This result is insensitive to the underlying model of the Lya LF (as well as cosmic v…
The goal of searching back in cosmic time to find star formation during the epoch of reionization will soon be within reach. We assess the detectability of high-redshift galaxies by combining cosmological hydrodynamic simulations of galaxy formation, stellar evolution models appropriate for the first generations of stars, and estimates of the efficiency for Lyman alpha to escape from forming galaxies into the intergalactic medium. Our simulated observations show that Lyman alpha emission at z ~ 8 may be observable in the near-infrared with 8-meter class telescopes and present-day technology. N…
We investigate the potential of exploiting Lya Emitters (LAEs) to constrain the volume-weighted mean neutral hydrogen fraction of the IGM, x_H, at high redshifts (specifically z~9). We use "semi-numerical'' simulations to efficiently generate density, velocity, and halo fields at z=9 in a 250 Mpc box, resolving halos with masses M>2.2e8 solar masses. We construct ionization fields corresponding to various values of x_H. With these, we generate LAE luminosity functions and "counts-in-cell'' statistics. As in previous studies, we find that LAEs begin to disappear rapidly when x_H > 0.5. Constrai…
I show that advanced simulations of cosmological reionization are able to fit the observed data on the mean transmitted flux in the hydrogen Lyman-alpha line at z~6. At the same time, posteriori models can be constructed that also produce a large value (20%) for the Thompson scattering optical depth, consistent with the WMAP measurements. Thus, it appears that a consistent picture emerges in which early reionization (as suggested by WMAP) is complete by z~6 in accord with the SLOAN data.
We study the luminosity functions of high-redshift galaxies in detailed hydrodynamic simulations of cosmic reionization, which are designed to reproduce the evolution of the Lyman-alpha forest between z=5 and z=6. We find that the luminosity functions and total stellar mass densities are in agreement with observations when plausible assumptions about reddenning at z=6 are made. Our simulations support the conclusion that stars alone reionized the universe.
Before reionization, the intergalactic medium (IGM) may have been sufficiently cold for low-mass "minihalos" to condense out of the gas and subsequently affect reionization. Previous work has shown that minihalos generate reasonably large 21 cm fluctuations. Here we consider this signal in its proper cosmological context and show that isolating minihalos from the rest of the IGM is extremely difficult. Using the well-known halo model, we compute the power spectrum of 21 cm fluctuations from minihalos and show that the signal decreases rapidly as feedback increases the Jeans mass. We then show …
The Lyman-alpha forest at z >~ 5.5 shows strong scatter in the mean transmission even when smoothed over very large spatial scales, >~ 50 Mpc/h. This has been interpreted as a signature of strongly fluctuating radiation fields, or patchy reionization. To test this claim, we calculate the scatter arising solely from density fluctuations, with a uniform ionizing background, using analytic arguments and simulations. This scatter alone is comparable to that observed. It rises steeply with redshift and is of order unity by z ~ 6, even on ~ 50 Mpc/h scales. This arises because: i) at z ~ 6, transmis…
The dominating reionization source in the young universe has yet to be identified. Possible candidates include metal poor starburst dwarf galaxies of which the Blue Compact Galaxy Haro 11 may represent a local counterpart. Using the Far Ultraviolet Spectroscopic Explorer (FUSE) we obtained spectra of Haro 11 to search for leaking ionizing radiation. A weak signal shortwards of the Lyman break is identified as Lyman continuum (LyC) emission escaping from the ongoing starburst. From profile fitting to weak metal lines we derive column densities of the low ionization species. Adopting a metallici…
Many models of early structure formation predict a period of heating immediately preceding reionization, when X-rays raise the gas temperature above that of the cosmic microwave background. These X-rays are often assumed to heat the intergalactic medium (IGM) uniformly, but in reality they will heat the gas more strongly closer to the sources. We develop a framework for calculating fluctuations in the 21 cm brightness temperature that originate from this spatial variation in the heating rate. High-redshift sources are highly clustered, leading to significant gas temperature fluctuations (with …