蛋白质序列间相似性搜索的细粒度并行化
Fine-grained parallelization of similarity search between protein sequences
摘要：
本报告提出了一个蛋白质序列比较算法的实现，专门设计用于加速耗时的部分并行硬件，如SSE指令，多核架构或图形板。已开发了三个程序：PLAST-P、TPLAST-N和PLAST-X。与NCBI BLAST家族程序（BLAST-P、TBLAST-N和BLAST-X）相比，它们提供了等效的结果，加速因子范围为5至10。
英文摘要：
This report presents the implementation of a protein sequence comparison algorithm specifically designed for speeding up time consuming part on parallel hardware such as SSE instructions, multicore architectures or graphic boards. Three programs have been developed: PLAST-P, TPLAST-N and PLAST-X. They provide equivalent results compared to the NCBI BLAST family programs (BLAST-P, TBLAST-N and BLAST-X) with a speed-up factor ranging from 5 to 10.
机构、总结、中文摘要均由AI分析而来，可能存在错误，请以论文正文为准。
