平均聚类系数:孤立节点和叶对小世界网络聚类测度的作用
Mean clustering coefficients: the role of isolated nodes and leafs on clustering measures for small-world networks
摘要:
许多网络表现出小世界性质的邻域连通性高于可比的随机网络。然而,如果节点有一个或没有邻居,则通常不定义局部邻居聚类的标准度量。在这种情况下,局部聚类传统上被设置为零,并且该值影响全局聚类系数。这样的过程会导致低估稀疏网络中的邻域聚类。我们建议包括$θ$作为叶和孤立节点的比例,以估计这些情况的贡献,并提供一个用于估计聚类系数的公式,从Watts和Strogatz(1998 Nature 393 440-2)的聚类系数定义中排除这些情况。排除叶和孤立的节点导致的值是高达140%,高于传统的观察到的网络的值,表明邻里连接通常被低估。我们发现,在比较不同的网络时,聚类系数的定义有很大的影响。对于43种生物体的代谢网络,当应用不同的定义时,58%的比较关系发生了变化。我们还表明,定义的影响小世界的功能和分类可以从非小世界网络的小世界网络。我们讨论了使用的替代措施,断开D,这是受叶和孤立的节点。
英文摘要:
Many networks exhibit the small-world property of the neighborhood connectivity being higher than in comparable random networks. However, the standard measure of local neighborhood clustering is typically not defined if a node has one or no neighbors. In such cases, local clustering has traditionally been set to zero and this value influenced the global clustering coefficient. Such a procedure leads to underestimation of the neighborhood clustering in sparse networks. We propose to include $θ$ as the proportion of leafs and isolated nodes to estimate the contribution of these cases and provide a formula for estimating a clustering coefficient excluding these cases from the Watts and Strogatz (1998 Nature 393 440-2) definition of the clustering coefficient. Excluding leafs and isolated nodes leads to values which are up to 140% higher than the traditional values for the observed networks indicating that neighborhood connectivity is normally underestimated. We find that the definition of the clustering coefficient has a major effect when comparing different networks. For metabolic networks of 43 organisms, relations changed for 58% of the comparisons when a different definition was applied. We also show that the definition influences small-world features and that the classification can change from non-small-world to small-world network. We discuss the use of an alternative measure, disconnectedness D, which is less influenced by leafs and isolated nodes.
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